Hi 
Please update to caddy v2.5.1, which has been released 14 days ago 
v2.4.6 is fairly old 
Regarding your actual question about multiple SAN (Subject Alternate Name) per certificate:
No, caddy will only issue certificates with exactly one SAN, not multiple.
If you want to know a bit more why, check this post here:
That specific post goes quite in depth, but feel free to read the whole thread 
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